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Yi-Hsien Su|Institute of Cellular and Organismic Biology, Academia Sinica

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  • Yi-Hsien Su Professor Yi-Hsien Su Research ID Professor Yi-Hsien Su ORCID
    Research Fellow
    • SpecialtyDevelopmental Biology, Gene Regulatory Networks, Systems Biology
    • E-mailyhsu@gate.sinica.edu.tw
    • Tel02-2789-9511
    • Website Yi-Hsien Su's LAB
    • LabR410/ICOB
Professional ExperienceOpenClose
2022
Research Fellow, Institute of Cellular and Organismic Biology, Academia Sinica
2016-2022
Associate Research Fellow, Institute of Cellular and Organismic Biology, Academia Sinica
2007-2016
Assistant Research Fellow, Institute of Cellular and Organismic Biology, Academia Sinica
2005-2007
Postdoctoral Research Fellow, Division of Biology, California Institute of Technology, USA
2005
Ph.D., Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, USA
Research InterestOpenClose

One of the central mysteries in biology is how diverse forms of animals develop and originated on this planet. From the perspective of a developmental biologist, this question can be addressed by deciphering how gene regulatory networks (GRNs) that are encoded in the genome regulate the formation of a specific body plan. On the other hand, an evolutionary developmental biologist may answer this question by comparing the developmental mechanisms of two or more extant animal groups. The combination of these approaches in Evolutionary Developmental Biology (EvoDevo) enables researchers to first reconstruct possible ancestral conditions. Based on this information, lineage-specific changes in developmental mechanisms and GRN architectures that deviate from ancestral conditions can then be decoded. Identification of such changes often provides insights into how distinct body forms could have originated during evolution. Taking our own phylum Chordata as an example, all chordates possess several phylum-specific characters, such as a hollow neural tube and a notochord. The two closest relatives of chordates are the phyla Echinodermata and Hemichordata, which constitute the superclade Ambulacraria. These animals lack chordate-specific traits and exhibit other uniquely evolved body plans that define each animal group. The three phyla belong to the deuterostomes, which is one of the two major branches of Bilateria (i.e., animals with bilateral symmetry). My lab investigates developmental mechanisms of sea urchin (Echinoderm) and acorn worm (Hemichordate) embryos to reconstruct the ancestral conditions of ambulacrarians and deuterostomes. We also address questions regarding how phylum-specific traits are originated from common ancestors. Results from our study contribute to a mechanistic understanding of deuterostome evolution and provide insights into the evolution of morphological novelties.

Selected PublicationOpenClose
  1. Fan, TP, Lee, JR, Lin, CY, Chen, YC, Cutting, AE, Cameron, RA, Yu, JK, Su, YH* (2025) Deep homology of a brachyury cis-regulatory syntax and the evolutionary origin of the notochord, Science Advances, 11, eadw3307.
  2. Pérez-Posada, A*, Lin, CY, Fan, TP, Lin, CY, Chen, YC, Gómez-Skarmeta, JL, Yu, JK, Su, YH*, Tena, JJ* (2024) Hemichordate cis-regulatory genomics and the gene expression dynamics of deuterostomes, Nature Ecology & Evolution, 8: 2213-2227.
  3. Lin, CY, Marlétaz, F, Pérez-Posada, A, Martínez García, PM, Schloissnig, S, Peluso, P, Conception, GT, Bump, P, Chen, YC, Chou, C, Lin, CY, Fan, TP, Tsai, CT, Gómez Skarmeta, JL, Tena, JJ, Lowe, CJ, Rank, DR, Rokhsar, DS*, Yu, JK*, Su, YH* (2024) Chromosome-level genome assemblies of 2 hemichordates provide new insights into deuterostome origin and chromosome evolution, PLOS Biology, 22(6): e3002661.
  4. Chou, C, Lin, CY, Lin, CY, Wang, A, Fan, TP, Wang, KT, Yu, JK, Su, YH* (2024) Tracing the evolutionary origin of chordate somites in the hemichordate Ptychodera flava, Integrative & Comparative Biology, 64: 1226-1242.
  5. Chang, WL and Su, YH* (2022) Zygotic hypoxia-inducible factor alpha regulates spicule elongation in the sea urchin embryo, Developmental Biology, 484: 63-74.
  6. Lin, CY, Yu, JK*, and Su, YH* (2021) Evidence for BMP-mediated specification of primordial germ cells in an indirect-developing hemichordate, Evolution & Development, 23: 28-45.
  7. Su, YH*, Chen, YC, Ting, HC, Fan, TP, Lin, CY, Wang, KT, and Yu, JK* (2019) BMP controls dorsoventral and neural patterning in indirect-developing hemichordates providing insights into a possible origin of chordates. Proceedings of the National Academy of Sciences of the United States of America, 116: 12925-12932.
  8. Chang, WL#, Chang, YC#, Lin, KT, Li, HR, Pai, CY, Chen, JH, and Su, YH* (2017) Asymmetric distribution of hypoxia-inducible factor α regulates dorsoventral axis in the early sea urchin embryo. Development, 144: 2940-2950 (#contributed equally; cover and feature article).
  9. Lin, CY and Su, YH* (2016) Genome editing in sea urchin embryos by using a CRISPR/Cas9 system. Developmental Biology, 409: 420-428.
  10. Luo YJ and Su YH* (2012) Opposing Nodal and BMP signals regulate left-right asymmetry in the sea urchin larva. PLoS Biology, 10(10): e1001402.