Fan, TP, Lee, JR, Lin, CY, Chen, YC, Cutting, AE, Cameron, RA, Yu, JK, Su, YH* (2025) Deep homology of a brachyury cis-regulatory syntax and the evolutionary origin of the notochord, Science Advances, 11, eadw3307.
Pérez-Posada, A*, Lin, CY, Fan, TP, Lin, CY, Chen, YC, Gómez-Skarmeta, JL, Yu, JK, Su, YH*, Tena, JJ* (2024) Hemichordate cis-regulatory genomics and the gene expression dynamics of deuterostomes, Nature Ecology & Evolution, 8: 2213-2227.
Lin, CY, Marlétaz, F, Pérez-Posada, A, Martínez García, PM, Schloissnig, S, Peluso, P, Conception, GT, Bump, P, Chen, YC, Chou, C, Lin, CY, Fan, TP, Tsai, CT, Gómez Skarmeta, JL, Tena, JJ, Lowe, CJ, Rank, DR, Rokhsar, DS*, Yu, JK*, Su, YH* (2024) Chromosome-level genome assemblies of 2 hemichordates provide new insights into deuterostome origin and chromosome evolution, PLOS Biology, 22(6): e3002661.
Chou, C, Lin, CY, Lin, CY, Wang, A, Fan, TP, Wang, KT, Yu, JK, Su, YH* (2024) Tracing the evolutionary origin of chordate somites in the hemichordate Ptychodera flava, Integrative & Comparative Biology, 64: 1226-1242.
Chang, WL and Su, YH* (2022) Zygotic hypoxia-inducible factor alpha regulates spicule elongation in the sea urchin embryo, Developmental Biology, 484: 63-74.
Lin, CY, Yu, JK*, and Su, YH* (2021) Evidence for BMP-mediated specification of primordial germ cells in an indirect-developing hemichordate, Evolution & Development, 23: 28-45.
Su, YH*, Chen, YC, Ting, HC, Fan, TP, Lin, CY, Wang, KT, and Yu, JK* (2019) BMP controls dorsoventral and neural patterning in indirect-developing hemichordates providing insights into a possible origin of chordates. Proceedings of the National Academy of Sciences of the United States of America, 116: 12925-12932.
Chang, WL#, Chang, YC#, Lin, KT, Li, HR, Pai, CY, Chen, JH, and Su, YH* (2017) Asymmetric distribution of hypoxia-inducible factor α regulates dorsoventral axis in the early sea urchin embryo. Development, 144: 2940-2950 (#contributed equally; cover and feature article).
Lin, CY and Su, YH* (2016) Genome editing in sea urchin embryos by using a CRISPR/Cas9 system. Developmental Biology, 409: 420-428.
Luo YJ and Su YH* (2012) Opposing Nodal and BMP signals regulate left-right asymmetry in the sea urchin larva. PLoS Biology, 10(10): e1001402.